南京医科大学生殖医学国重王曦团队

CRISPR-assisted detection of RNA–protein interactions in living cells

2020

期刊 Nature Methods

作者 Wenkai Yi · Jingyu Li · Xiaoxuan Zhu · Xi Wang · Ligang Fan · Wenju Sun · Linbu Liao · Jilin Zhang · Xiaoyu Li · Jing Ye · Fulin Chen · Jussi Taipale · Kui Ming Chan · Liang Zhang · Jian Yan

Human Mast Cell Proteome Reveals Unique Lineage, Putative Functions, and Structural Basis for Cell Ablation

2020

期刊 Immunity

作者 Thomas Plum · Xi Wang · Mandy Rettel · Jeroen Krijgsveld · Thorsten B. Feyerabend · Hans-Reimer Rodewald

Resolving Fates and Single-Cell Transcriptomes of Hematopoietic Stem Cell Clones by PolyloxExpress Barcoding

2020

期刊 Cell Stem Cell

作者 Weike Pei · Fuwei Shang · Xi Wang · Ann-Kathrin Fanti · Alessandro Greco · Katrin Busch · Kay Klapproth · Qin Zhang · Claudia Quedenau · Sascha Sauer · Thorsten B. Feyerabend · Thomas Höfer · Hans-Reimer Rodewald

Single-Cell RNA Sequencing of Tumor-Infiltrating NK Cells Reveals that Inhibition of Transcription Factor HIF-1α Unleashes NK Cell Activity

2020

期刊 Immunity

作者 Jing Ni · Xi Wang · Ana Stojanovic · Qin Zhang · Marian Wincher · Lea Bühler · Annette Arnold · Margareta P. Correia · Manuel Winkler · Philipp-Sebastian Koch · Veronika Sexl · Thomas Höfer · Adelheid Cerwenka

Full-length transcriptome reconstruction reveals a large diversity of RNA and protein isoforms in rat hippocampus

2019

期刊 Nature Communications

作者 Xi Wang · Xintian You · Julian D. Langer · Jingyi Hou · Fiona Rupprecht · Irena Vlatkovic · Claudia Quedenau · Georgi Tushev · Irina Epstein · Bernhard Schaefke · Wei Sun · Liang Fang · Guipeng Li · Yuhui Hu · Erin M. Schuman · Wei Chen

Super-enhancers in transcriptional regulation and genome organization

2019

期刊 Nucleic Acids Research

作者 Xi Wang · Murray J Cairns · Jian Yan

The dynamic proteome of influenza A virus infection identifies M segment splicing as a host range determinant

2019

期刊 Nature Communications

作者 Boris Bogdanow · Xi Wang · Katrin Eichelbaum · Anne Sadewasser · Immanuel Husic · Katharina Paki · Matthias Budt · Martha Hergeselle · Barbara Vetter · Jingyi Hou · Wei Chen · Lüder Wiebusch · Irmtraud M. Meyer · Thorsten Wolff · Matthias Selbach

Using Cre-recombinase-driven Polylox barcoding for in vivo fate mapping in mice

2019

期刊 Nature Protocols

作者 Weike Pei · Xi Wang · Jens Rössler · Thorsten B. Feyerabend · Thomas Höfer · Hans-Reimer Rodewald

A Balance of Yki/Sd Activator and E2F1/Sd Repressor Complexes Controls Cell Survival and Affects Organ Size

2017

期刊 Developmental Cell

作者 Peng Zhang · Chunli Pei · Xi Wang · Jinyi Xiang · Bao-Fa Sun · Yongsheng Cheng · Xiaolong Qi · Marco Marchetti · Jia-Wei Xu · Ying-Pu Sun · Bruce A. Edgar · Zengqiang Yuan

Polylox barcoding reveals haematopoietic stem cell fates realized in vivo

2017

期刊 Nature

作者 Weike Pei · Thorsten B. Feyerabend · Jens Rössler · Xi Wang · Daniel Postrach · Katrin Busch · Immanuel Rode · Kay Klapproth · Nikolaus Dietlein · Claudia Quedenau · Wei Chen · Sascha Sauer · Stephan Wolf · Thomas Höfer · Hans-Reimer Rodewald

Kinetic Analysis of Protein Stability Reveals Age-Dependent Degradation

2016

期刊 Cell

作者 Erik Mcshane · Celine Sin · Henrik Zauber · Jonathan N. Wells · Neysan Donnelly · Xi Wang · Jingyi Hou · Wei Chen · Zuzana Storchova · Joseph A. Marsh · Angelo Valleriani · Matthias Selbach

Pervasive isoform‐specific translational regulation via alternative transcription start sites in mammals

2016

期刊 Molecular Systems Biology

作者 Xi Wang · Jingyi Hou · Claudia Quedenau · Wei Chen

Extensive allele‐specific translational regulation in hybrid mice

2015

期刊 Molecular Systems Biology

作者 Jingyi Hou · Xi Wang · Erik Mcshane · Henrik Zauber · Wei Sun · Matthias Selbach · Wei Chen

Optimal consistency in microRNA expression analysis using reference-gene-based normalization

2015

期刊 Molecular BioSystems

作者 Xi Wang · Erin J. Gardiner · Murray J Cairns

SeqGSEA: a Bioconductor package for gene set enrichment analysis of RNA-Seq data integrating differential expression and splicing

2014

期刊 Bioinformatics

作者 Xi Wang · Murray J Cairns

Gene set enrichment analysis of RNA-Seq data: integrating differential expression and splicing

2013

期刊 BMC Bioinformatics

作者 Xi Wang · Murray J Cairns

Pinpointing transcription factor binding sites from ChIP-seq data with SeqSite

2011

期刊 BMC Systems Biology

作者 Xi Wang · Xuegong Zhang

ISOFORM ABUNDANCE INFERENCE PROVIDES A MORE ACCURATE ESTIMATION OF GENE EXPRESSION LEVELS IN RNA-SEQ

2010

期刊 Journal of Bioinformatics and Computational Biology

作者 Xi Wang · Zhengpeng Wu · Xuegong Zhang

Using non-uniform read distribution models to improve isoform expression inference in RNA-Seq

2010

期刊 Bioinformatics

作者 Zhengpeng Wu · Xi Wang · Xuegong Zhang

DEGseq: an R package for identifying differentially expressed genes from RNA-seq data

2009

期刊 Bioinformatics

作者 Likun Wang · Zhixing Feng · Xi Wang · Xiaowo Wang · Xuegong Zhang

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CRISPR-assisted detection of RNA–protein interactions in living cells

Human Mast Cell Proteome Reveals Unique Lineage, Putative Functions, and Structural Basis for Cell Ablation

Resolving Fates and Single-Cell Transcriptomes of Hematopoietic Stem Cell Clones by PolyloxExpress Barcoding

Single-Cell RNA Sequencing of Tumor-Infiltrating NK Cells Reveals that Inhibition of Transcription Factor HIF-1α Unleashes NK Cell Activity

Full-length transcriptome reconstruction reveals a large diversity of RNA and protein isoforms in rat hippocampus

Super-enhancers in transcriptional regulation and genome organization

The dynamic proteome of influenza A virus infection identifies M segment splicing as a host range determinant

Using Cre-recombinase-driven Polylox barcoding for in vivo fate mapping in mice

A Balance of Yki/Sd Activator and E2F1/Sd Repressor Complexes Controls Cell Survival and Affects Organ Size

Polylox barcoding reveals haematopoietic stem cell fates realized in vivo

Kinetic Analysis of Protein Stability Reveals Age-Dependent Degradation

Pervasive isoform‐specific translational regulation via alternative transcription start sites in mammals

Extensive allele‐specific translational regulation in hybrid mice

Optimal consistency in microRNA expression analysis using reference-gene-based normalization

SeqGSEA: a Bioconductor package for gene set enrichment analysis of RNA-Seq data integrating differential expression and splicing

Gene set enrichment analysis of RNA-Seq data: integrating differential expression and splicing

Pinpointing transcription factor binding sites from ChIP-seq data with SeqSite

ISOFORM ABUNDANCE INFERENCE PROVIDES A MORE ACCURATE ESTIMATION OF GENE EXPRESSION LEVELS IN RNA-SEQ

Using non-uniform read distribution models to improve isoform expression inference in RNA-Seq

DEGseq: an R package for identifying differentially expressed genes from RNA-seq data